Cribi-Genomics

SmithWaterman-CUDA documentation. The GPGPU project to run Smith-Waterman algorithm on the modern GPU (s) made by NVIDIA

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Svetlin A. Manavski, Giorgio Valle, "CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment", BMC Bioinformatics 2008, 9(Suppl 2):S10 (26 March 2008)

For detailed instructions on how to compile the project, please follow: INSTALL.TXT

There is also a user manual which may be downloaded here